Basic Information
Locus ID:
gene:TRIDC7AG072320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Transcription initiation factor TFIID subunit 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 695902974 | 695920730 | + | gene:TRIDC7AG072320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 203,193.63 Da | 50.71 | 73.67 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04369 | Bromodomain | 1696 | 1795 | 4.11662E-27 | - |
| Pfam | PF00439 | Bromodomain | 1701 | 1778 | 5.6E-21 | IPR001487 |
| Pfam | PF09247 | TATA box-binding protein binding | 22 | 69 | 1.7E-8 | IPR009067 |
| Pfam | PF12157 | Protein of unknown function (DUF3591) | 562 | 1130 | 2.5E-131 | IPR022591 |
| Pfam | PF00240 | Ubiquitin family | 649 | 716 | 1.8E-5 | IPR000626 |
| SUPERFAMILY | SSF47370 | Bromodomain | 1689 | 1803 | 5.63E-28 | IPR036427 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 641 | 717 | 4.47E-11 | IPR029071 |
| SUPERFAMILY | SSF47055 | TAF(II)230 TBP-binding fragment | 31 | 66 | 1.44E-6 | IPR036741 |
| Gene3D | G3DSA:3.10.20.90 | - | 638 | 717 | 1.8E-10 | - |
| Gene3D | G3DSA:1.20.920.10 | - | 1659 | 1810 | 4.8E-29 | IPR036427 |
| SMART | SM00297 | bromo_6 | 1690 | 1800 | 9.1E-26 | IPR001487 |
| SMART | SM00213 | ubq_7 | 645 | 717 | 4.1E-8 | IPR000626 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 1710 | 1780 | 18.1292 | IPR001487 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 645 | 715 | 12.313198 | IPR000626 |
| ProSitePatterns | PS00633 | Bromodomain signature. | 1715 | 1772 | - | IPR018359 |
| PRINTS | PR00503 | Bromodomain signature | 1727 | 1743 | 2.9E-8 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1761 | 1780 | 2.9E-8 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1743 | 1761 | 2.9E-8 | IPR001487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1588 | 1612 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1633 | 1692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1268 | 1310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1495 | 1535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1281 | 1298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1567 | 1612 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1519 | 1535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1646 | 1677 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32750.1 | HAC13 protein (HAC13). This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. | 0 |
| RefSeq | XP_037459058.1 | transcription initiation factor TFIID subunit 1-like [Triticum dicoccoides] | 0 |
| Q67W65 | Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6RNV1 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG072320.