Basic Information
Locus ID:
gene:TRIDC7AG071220
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 691933845 | 691943848 | - | gene:TRIDC7AG071220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 48,194.51 Da | 46.65 | 81.55 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 117 | 437 | 5.57481E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 225 | 260 | 9.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 186 | 218 | 1.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 386 | 8.8E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 344 | 5.6E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 148 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 302 | 3.2E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 110 | 436 | 2.64E-81 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 265 | 345 | 9.3E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 346 | 438 | 2.5E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 50 | 264 | 2.0E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 6.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 260 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 218 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 148 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 3.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 302 | 3.4E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 354 | 395 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 354 | 389 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 228 | 269 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 311 | 16.390055 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 307 | 12.551949 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 186 | 218 | 12.657402 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 17.091837 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 228 | 262 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 116 | 149 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 186 | 218 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 13.369217 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 331 | 345 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 373 | 387 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 135 | 149 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 289 | 303 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 289 | 303 | 1.1E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 373 | 387 | 1.1E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 205 | 219 | 1.1E-9 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 177 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25150.2 | - | 0 |
| RefSeq | XP_037458551.1 | transcription initiation factor TFIID subunit 5-like isoform X2 [Triticum dicoccoides] | 0 |
| Q6S7B0 | Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana OX=3702 GN=TAF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RRU0 | TFIID_NTD2 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG071220.