Basic Information
Locus ID:
gene:TRIDC7AG069910
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 686269785 | 686272427 | + | gene:TRIDC7AG069910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 41,587.59 Da | 43.20 | 74.13 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 81 | 372 | 3.01067E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 78 | 112 | 3.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 161 | 199 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 332 | 4.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 338 | 372 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 121 | 156 | 2.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 282 | 3.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 78 | 372 | 1.23E-82 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 73 | 375 | 5.0E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 159 | 199 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 117 | 156 | 6.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 332 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 282 | 4.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 74 | 113 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 240 | 0.06 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 124 | 165 | 17.22551 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 215 | 249 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 342 | 375 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 342 | 375 | 9.256512 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 250 | 284 | 12.815584 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 166 | 208 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 284 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 81 | 112 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 341 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 81 | 112 | 11.73468 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 124 | 161 | 13.105581 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 319 | 333 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 143 | 157 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 186 | 200 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 269 | 283 | 2.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 186 | 200 | 2.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 143 | 157 | 2.7E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43770.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_044432162.1 | U5 small nuclear ribonucleoprotein 40 kDa protein-like [Triticum aestivum] | 0 |
| Q2HJH6 | U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1 | 0 | |
| TrEMBL | M8CYH3 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG069910.