Basic Information
Locus ID:
gene:TRIDC7AG065050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 657437749 | 657444296 | + | gene:TRIDC7AG065050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 34,687.17 Da | 36.66 | 88.53 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 1 | 76 | 5.7969E-48 | - |
| Pfam | PF00240 | Ubiquitin family | 79 | 122 | 2.8E-17 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 238 | 303 | 3.1E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 1.0E-31 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 7.93E-32 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 76 | 124 | 7.19E-18 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 204 | 305 | 5.25E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 236 | 306 | 2.6E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 77 | 124 | 1.7E-29 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 76 | 3.4E-44 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 197 | 235 | 3.3E-7 | - |
| SMART | SM00213 | ubq_7 | 1 | 72 | 1.3E-33 | IPR000626 |
| SMART | SM00213 | ubq_7 | 236 | 301 | 1.5E-17 | IPR000626 |
| SMART | SM00213 | ubq_7 | 77 | 163 | 3.7E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 236 | 305 | 16.51585 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 77 | 147 | 17.169111 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 29.798843 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 203 | 235 | 8.676706 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 3.1E-36 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 3.1E-36 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 3.1E-36 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_042384870.1 | polyubiquitin-like [Zingiber officinale] | 0 |
| P69309 | Polyubiquitin OS=Avena fatua OX=4499 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7DUV4 | Polyubiquitin OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G035400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG065050.