Basic Information
Locus ID:
gene:TRIDC7AG064620
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 654885526 | 654890010 | - | gene:TRIDC7AG064620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 53,238.00 Da | 63.74 | 87.05 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 237 | 285 | 1.7454E-15 | - |
| Pfam | PF12906 | RING-variant domain | 237 | 284 | 1.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 288 | 2.42E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 225 | 293 | 4.9E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 236 | 285 | 3.4E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 229 | 291 | 19.114313 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 485 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037458943.1 | uncharacterized protein LOC119329944 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6RQF2 | RING-CH-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG064620.