Basic Information
Locus ID:
gene:TRIDC7AG062880
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 643174164 | 643179607 | - | gene:TRIDC7AG062880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 15,706.84 Da | 31.25 | 104.30 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 28 | 103 | 4.33138E-49 | - |
| Pfam | PF00240 | Ubiquitin family | 1 | 25 | 7.0E-6 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 30 | 100 | 7.5E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 106 | 142 | 3.0E-12 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 27 | 7.72E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 103 | 142 | 4.84E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 27 | 103 | 1.47E-33 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 27 | 7.0E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 28 | 103 | 8.2E-46 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 104 | 142 | 3.3E-23 | - |
| SMART | SM00213 | ubq_7 | 28 | 99 | 3.1E-34 | IPR000626 |
| SMART | SM00213 | ubq_7 | 104 | 142 | 1.6 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 27 | 10.854246 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 104 | 142 | 13.227765 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 28 | 103 | 29.668192 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 54 | 79 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 38 | 58 | 1.3E-37 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 80 | 101 | 1.3E-37 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 59 | 79 | 1.3E-37 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_007154494.1 | hypothetical protein PHAVU_003G1236001g, partial [Phaseolus vulgaris] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7S0P7I5 | Polyubiquitin (Fragment) OS=Minchinia chitonis OX=262233 GN=MCHI0186_LOCUS309 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG062880.