Basic Information
Locus ID:
gene:TRIDC7AG061960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Essential component of the cytosolic iron-sulfur (Fe S) protein assembly machinery. Required for the maturation of extramitochondrial Fe S proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 637160472 | 637221489 | + | gene:TRIDC7AG061960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 34,067.24 Da | 30.88 | 72.29 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 1 | 299 | 2.12583E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 61 | 97 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 142 | 4.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 298 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 24 | 53 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 152 | 193 | 1.2E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1 | 298 | 6.23E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 303 | 4.9E-97 | IPR015943 |
| SMART | SM00320 | WD40_4 | 104 | 143 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 248 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 193 | 2.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 299 | 6.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 59 | 98 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 14 | 54 | 9.9E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 193 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 66 | 99 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 193 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 111 | 142 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 66 | 99 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 306 | 11.550137 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 111 | 142 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 22 | 63 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 22 | 54 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 301 | 12.546961 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 85 | 99 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 130 | 144 | 7.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 7.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 7.5E-7 | IPR020472 |
| Hamap | MF_03037 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. | 1 | 302 | 21.86347 | IPR028608 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26060.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037462724.1 | protein CIA1-like isoform X2 [Triticum dicoccoides] | 0 |
| O80990 | Protein CIA1 OS=Arabidopsis thaliana OX=3702 GN=CIA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7REN9 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG061960.