Basic Information
Locus ID:
gene:TRIDC7AG058920
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 611698667 | 611700376 | - | gene:TRIDC7AG058920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 32,602.62 Da | 48.31 | 80.10 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 9 | 51 | 3.63546E-8 | - |
| Pfam | PF13519 | von Willebrand factor type A domain | 146 | 238 | 6.0E-15 | IPR002035 |
| Pfam | PF17123 | RING-like zinc finger | 9 | 36 | 2.7E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 58 | 5.16E-14 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 143 | 238 | 3.71E-20 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 145 | 247 | 5.5E-25 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 61 | 2.4E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 9 | 50 | 4.0E-5 | IPR001841 |
| SMART | SM00327 | VWA_4 | 143 | 305 | 1.8E-6 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 145 | 253 | 11.85542 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 9 | 51 | 10.940213 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 92 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_051230375.1 | E3 ubiquitin-protein ligase WAV3-like [Lolium perenne] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RP47 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG058920.