Basic Information
Locus ID:
gene:TRIDC7AG053140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 553798059 | 553812878 | - | gene:TRIDC7AG053140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 50,570.57 Da | 50.90 | 65.58 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 414 | 457 | 6.67135E-21 | - |
| Pfam | PF07002 | Copine | 104 | 318 | 3.0E-74 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 413 | 452 | 1.7E-8 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 81 | 262 | 4.3E-10 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 413 | 453 | 2.51E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 393 | 457 | 2.8E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 414 | 446 | 2.7E-4 | IPR001841 |
| SMART | SM00327 | VWA_4 | 79 | 282 | 6.9E-9 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 414 | 447 | 10.984472 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14420.1 | RING domain ligase2. | 0 |
| RefSeq | XP_037457834.1 | E3 ubiquitin-protein ligase RGLG5-like [Triticum dicoccoides] | 0 |
| Q9LY87 | E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RMW1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG053140.