Basic Information
Locus ID:
gene:TRIDC7AG045480
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 468788448 | 468791017 | + | gene:TRIDC7AG045480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 49,703.80 Da | 49.30 | 66.01 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 373 | 418 | 2.2E-8 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 193 | 241 | 4.4E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 301 | 372 | 5.54E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 191 | 245 | 4.65E-11 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 373 | 421 | 1.51E-11 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 316 | 378 | 2.1E-5 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 379 | 450 | 8.3E-9 | IPR013083 |
| Gene3D | G3DSA:2.30.30.1150 | - | 96 | 243 | 7.3E-15 | - |
| SMART | SM00249 | PHD_3 | 318 | 372 | 0.0029 | IPR001965 |
| SMART | SM00249 | PHD_3 | 373 | 418 | 1.9E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 190 | 240 | 4.5E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 316 | 374 | 8.8581 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 190 | 242 | 9.285299 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 370 | 420 | 9.6502 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 306 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77250.1 | RING/FYVE/PHD-type zinc finger family protein. | 0 |
| RefSeq | XP_037459057.1 | PHD finger protein EHD3-like [Triticum dicoccoides] | 0 |
| Q6ZJM9 | PHD finger protein EHD3 OS=Oryza sativa subsp. japonica OX=39947 GN=EHD3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RKR3 | PHD-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG045480.