Basic Information
Locus ID:
gene:TRIDC7AG043040
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 433750261 | 433752697 | - | gene:TRIDC7AG043040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 39,805.57 Da | 44.29 | 78.33 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 319 | 363 | 9.10202E-20 | - |
| Pfam | PF07002 | Copine | 64 | 277 | 1.7E-74 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 316 | 358 | 2.3E-9 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 40 | 222 | 9.64E-9 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 359 | 1.38E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 365 | 1.8E-14 | IPR013083 |
| SMART | SM00327 | VWA_4 | 39 | 242 | 1.9E-5 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 320 | 353 | 11.309038 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 310 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79380.1 | Ca(2)-dependent phospholipid-binding protein (Copine) family. | 0 |
| RefSeq | XP_037459307.1 | E3 ubiquitin-protein ligase RGLG4-like [Triticum dicoccoides] | 0 |
| Q9SAL0 | E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 SV=1 | 0 | |
| TrEMBL | M7Z2Q9 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 GN=TRIUR3_03004 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG043040.