Basic Information
Locus ID:
gene:TRIDC7AG042990
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
FIE
Description:
endosperm development
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 432936465 | 432940682 | - | gene:TRIDC7AG042990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 46,206.11 Da | 40.39 | 79.28 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 161 | 199 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 245 | 4.6E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 75 | 407 | 6.05E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 62 | 410 | 4.3E-93 | IPR015943 |
| SMART | SM00320 | WD40_4 | 320 | 361 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 245 | 4.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 156 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 407 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 308 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 199 | 1.2E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 212 | 247 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 247 | 11.210233 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 166 | 208 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 166 | 203 | 9.414692 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 186 | 200 | 4.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 295 | 309 | 4.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 232 | 246 | 4.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20740.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript levels increase transiently just after fertilization. | 0 |
| RefSeq | XP_037460392.1 | polycomb group protein FIE1-like [Triticum dicoccoides] | 0 |
| Q6ZJX0 | Polycomb group protein FIE1 OS=Oryza sativa subsp. japonica OX=39947 GN=FIE2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7V5R1 | WD_REPEATS_REGION domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG042990.