Basic Information
Locus ID:
gene:TRIDC7AG041190
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 394097991 | 394112082 | + | gene:TRIDC7AG041190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 118,406.88 Da | 44.25 | 80.05 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 298 | 681 | 3.39583E-76 | - |
| CDD | cd18793 | SF2_C_SNF | 919 | 1024 | 9.03069E-54 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 795 | 839 | 9.0E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 914 | 1014 | 1.6E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 301 | 758 | 7.5E-61 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 282 | 681 | 4.79E-38 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 689 | 1071 | 3.32E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 790 | 842 | 1.91E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 270 | 382 | 1.9E-6 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 452 | 547 | 1.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 696 | 1072 | 1.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 780 | 847 | 1.2E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 565 | 682 | 5.1E-28 | IPR038718 |
| SMART | SM00487 | ultradead3 | 294 | 662 | 8.0E-15 | IPR014001 |
| SMART | SM00184 | ring_2 | 796 | 834 | 8.1E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 931 | 1014 | 6.7E-17 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 474 | 643 | 11.96776 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 907 | 1067 | 13.416899 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 796 | 835 | 11.132002 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 811 | 820 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 574 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_037457875.1 | helicase-like transcription factor CHR28 isoform X1 [Triticum dicoccoides] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453RW29 | Helicase ATP-binding domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG041190.