Basic Information
Locus ID:
gene:TRIDC7AG040490
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 374892515 | 374894970 | - | gene:TRIDC7AG040490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 70,692.01 Da | 45.53 | 103.58 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 278 | 313 | 4.71654E-17 | - |
| Pfam | PF04564 | U-box domain | 274 | 338 | 1.5E-15 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 472 | 509 | 1.1E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 389 | 428 | 1.4E-7 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 274 | 341 | 2.27E-21 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 359 | 630 | 2.0E-38 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 341 | 633 | 6.1E-46 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 28 | 141 | 2.4E-7 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 273 | 340 | 1.1E-21 | IPR013083 |
| SMART | SM00185 | arm_5 | 471 | 511 | 0.22 | IPR000225 |
| SMART | SM00185 | arm_5 | 430 | 470 | 30.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 512 | 552 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 389 | 429 | 1.5E-4 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 277 | 333 | 6.1E-20 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 400 | 442 | 11.7074 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 273 | 340 | 19.975357 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42340.1 | Plant U-Box 15. | 0 |
| RefSeq | XP_037461595.1 | U-box domain-containing protein 15-like [Triticum dicoccoides] | 0 |
| Q681N2 | U-box domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=PUB15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6RGC0 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG040490.