Basic Information
Locus ID:
gene:TRIDC7AG030450
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 208218477 | 208221778 | - | gene:TRIDC7AG030450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 40,622.54 Da | 38.00 | 77.51 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 327 | 370 | 5.59697E-22 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 324 | 365 | 1.6E-8 | - |
| Pfam | PF07002 | Copine | 55 | 269 | 8.3E-71 | IPR010734 |
| SUPERFAMILY | SSF53300 | vWA-like | 32 | 214 | 6.23E-11 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 366 | 8.13E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 370 | 6.9E-13 | IPR013083 |
| SMART | SM00327 | VWA_4 | 30 | 233 | 3.1E-7 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 360 | 10.33534 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 320 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01650.1 | RING domain ligase1. | 0 |
| RefSeq | XP_037462202.1 | E3 ubiquitin-protein ligase RGLG1-like [Triticum dicoccoides] | 0 |
| Q9SS90 | E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SH90 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG030450.