Basic Information
Locus ID:
gene:TRIDC7AG029220
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 197196967 | 197202400 | - | gene:TRIDC7AG029220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 48,235.54 Da | 59.15 | 67.12 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16521 | RING-HC_MKRN | 251 | 309 | 2.42131E-17 | - |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 343 | 365 | 5.3E-4 | - |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 185 | 207 | 2.2E-4 | IPR000571 |
| Pfam | PF13639 | Ring finger domain | 250 | 309 | 5.2E-7 | IPR001841 |
| Pfam | PF15663 | Zinc-finger containing family | 20 | 80 | 1.6E-7 | IPR041686 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 22 | 46 | 3.79E-7 | IPR036855 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 51 | 73 | 5.1E-5 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 315 | 5.16E-13 | - |
| Gene3D | G3DSA:1.20.120.1350 | - | 16 | 51 | 4.8E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 234 | 320 | 6.9E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.1370.210 | - | 52 | 212 | 1.2E-7 | - |
| SMART | SM00356 | c3hfinal6 | 338 | 366 | 0.01 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 21 | 47 | 1.8E-5 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 182 | 208 | 0.015 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 51 | 75 | 5.5E-4 | IPR000571 |
| SMART | SM00184 | ring_2 | 251 | 308 | 2.9E-7 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 182 | 209 | 11.760412 | IPR000571 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 251 | 309 | 12.297489 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 49 | 76 | 14.267303 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 21 | 48 | 14.220357 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 338 | 367 | 13.647621 | IPR000571 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 275 | 284 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 121 | - | - |
| Coils | Coil | Coil | 230 | 250 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08505.1 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_020148368.1 | E3 ubiquitin-protein ligase makorin isoform X1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q5ZA07 | E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica OX=39947 GN=MKRN PE=2 SV=1 | 0 | |
| TrEMBL | A0A453RFF1 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG029220.