Basic Information
Locus ID:
gene:TRIDC7AG028760
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 193154237 | 193156068 | - | gene:TRIDC7AG028760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 56,038.33 Da | 66.02 | 89.13 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16453 | RING-Ubox | 44 | 72 | 1.35399E-10 | - |
| Pfam | PF04564 | U-box domain | 39 | 108 | 1.5E-9 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 114 | 3.0E-14 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 203 | 468 | 1.73E-25 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 193 | 334 | 2.0E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 114 | 1.8E-15 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 335 | 476 | 4.4E-12 | IPR011989 |
| SMART | SM00185 | arm_5 | 396 | 438 | 100.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 42 | 107 | 1.9E-9 | IPR003613 |
| SMART | SM00185 | arm_5 | 223 | 265 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 266 | 308 | 0.64 | IPR000225 |
| SMART | SM00185 | arm_5 | 309 | 351 | 6.8 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 234 | 278 | 9.712399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 38 | 114 | 16.658218 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 277 | 316 | 9.0474 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 320 | 364 | 9.8174 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 29 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47820.1 | PLANT U-BOX 39. | 0 |
| RefSeq | XP_037463069.1 | U-box domain-containing protein 39-like [Triticum dicoccoides] | 0 |
| Q9STT1 | U-box domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=PUB39 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6RDK7 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG028760.