Basic Information
Locus ID:
gene:TRIDC7AG026710
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 173094874 | 173099025 | - | gene:TRIDC7AG026710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 100,735.67 Da | 51.54 | 97.96 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 226 | 300 | 4.6E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 305 | 1.77E-21 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 511 | 917 | 2.4E-11 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 318 | 595 | 1.15E-31 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 313 | 504 | 2.0E-20 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 774 | 922 | 1.3E-8 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 216 | 309 | 6.2E-19 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 505 | 681 | 8.1E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 227 | 295 | 3.6E-19 | IPR003613 |
| SMART | SM00185 | arm_5 | 375 | 415 | 42.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 541 | 586 | 8.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 784 | 826 | 0.15 | IPR000225 |
| SMART | SM00185 | arm_5 | 460 | 500 | 6.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 875 | 916 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 501 | 540 | 26.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 334 | 374 | 260.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 223 | 302 | 23.487099 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 862 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68940.3 | Armadillo/beta-catenin-like repeat family protein. | 0 |
| RefSeq | XP_037458172.1 | putative U-box domain-containing protein 42 [Triticum dicoccoides] | 0 |
| Q9CAA7 | Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=PUB42 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6RGI6 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG026710.