Basic Information
Locus ID:
gene:TRIDC7AG026000
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 166548607 | 166554428 | + | gene:TRIDC7AG026000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 43,216.25 Da | 55.57 | 87.37 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 23 | 74 | 1.85838E-16 | - |
| Pfam | PF00627 | UBA/TS-N domain | 169 | 207 | 5.3E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 22 | 76 | 4.7E-10 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 286 | 341 | 4.2E-19 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 368 | 403 | 8.4E-9 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 352 | 409 | 9.24E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 282 | 346 | 4.71E-19 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 22 | 89 | 6.83E-13 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 156 | 213 | 9.11E-11 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 276 | 342 | 9.4E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 162 | 212 | 1.2E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 14 | 80 | 2.2E-15 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 360 | 406 | 2.8E-21 | - |
| SMART | SM00165 | uba_6 | 368 | 405 | 1.6E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 169 | 209 | 5.9E-5 | IPR015940 |
| SMART | SM00727 | CBM | 282 | 327 | 1.2E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 11 | 75 | 0.0082 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 22 | 411 | 5.3E-99 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 365 | 406 | 14.571051 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 170 | 210 | 12.402311 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 23 | 79 | 12.313198 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 378 | 7.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 379 | 393 | 7.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 394 | 409 | 7.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 312 | 334 | 7.5E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 148 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_037457199.1 | ubiquitin receptor RAD23d-like [Triticum dicoccoides] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6RGD2 | Ubiquitin receptor RAD23 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG026000.