Basic Information
Locus ID:
gene:TRIDC7AG025290
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 159384582 | 159386108 | + | gene:TRIDC7AG025290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 47,147.18 Da | 36.92 | 101.36 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 44 | 85 | 6.48562E-22 | - |
| Pfam | PF04564 | U-box domain | 40 | 111 | 2.0E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 115 | 1.87E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 201 | 395 | 1.11E-17 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 110 | 438 | 3.4E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 109 | 2.4E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 43 | 106 | 1.5E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 39 | 113 | 33.836567 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037456617.1 | U-box domain-containing protein 21-like [Triticum dicoccoides] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7V5P5 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG025290.