Basic Information
Locus ID:
gene:TRIDC7AG017780
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 95350235 | 95355480 | - | gene:TRIDC7AG017780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 53,800.40 Da | 43.59 | 91.62 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 112 | 232 | 8.8E-13 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 248 | 274 | 7.2E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 44 | 105 | 1.1E-7 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 44 | 298 | 3.8E-47 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 402 | 2.05E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 36 | 167 | 1.2E-29 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 333 | 413 | 1.1E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 174 | 302 | 9.8E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 107 | 136 | 0.016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 247 | 276 | 0.035 | IPR002110 |
| SMART | SM00248 | ANK_2a | 141 | 171 | 58.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 74 | 103 | 5.2E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 204 | 233 | 3.9E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 346 | 395 | 8.0E-4 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 247 | 278 | 9.622166 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 107 | 139 | 9.24383 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 204 | 232 | 12.540617 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 74 | 105 | 12.514086 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 204 | 236 | 13.06336 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 74 | 106 | 13.30375 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 247 | 279 | 10.81972 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 346 | 396 | 10.084539 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 361 | 370 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 205 | 220 | 3.3E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 263 | 277 | 3.3E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_037459840.1 | probable E3 ubiquitin-protein ligase XBOS35 [Triticum dicoccoides] | 0 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6RAU8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG017780.