Basic Information
Locus ID:
gene:TRIDC7AG014340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Tetratricopeptide repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 72988934 | 72994062 | - | gene:TRIDC7AG014340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 55,163.69 Da | 54.65 | 76.55 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 414 | 455 | 2.5648E-23 | - |
| Pfam | PF04564 | U-box domain | 410 | 480 | 6.0E-19 | IPR003613 |
| Pfam | PF13414 | TPR repeat | 157 | 192 | 2.3E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 405 | 482 | 2.74E-26 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 149 | 261 | 3.59E-36 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 10 | 138 | 6.07E-28 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 408 | 484 | 7.4E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 144 | 270 | 1.2E-32 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 8 | 143 | 1.1E-27 | IPR011990 |
| SMART | SM00028 | tpr_5 | 11 | 44 | 280.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 150 | 183 | 7.1E-6 | IPR019734 |
| SMART | SM00028 | tpr_5 | 45 | 78 | 0.11 | IPR019734 |
| SMART | SM00504 | Ubox_2 | 413 | 476 | 1.9E-27 | IPR003613 |
| SMART | SM00028 | tpr_5 | 184 | 217 | 4.4E-4 | IPR019734 |
| SMART | SM00028 | tpr_5 | 218 | 251 | 0.29 | IPR019734 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 409 | 483 | 39.798569 | IPR003613 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 150 | 183 | 10.1189 | IPR019734 |
| Coils | Coil | Coil | 122 | 155 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 337 | 392 | - | - |
| Coils | Coil | Coil | 288 | 315 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62740.1 | stress-inducible protein, putative. | 0 |
| RefSeq | XP_037460436.1 | U-box domain-containing protein 70-like [Triticum dicoccoides] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7QXC7 | U-box domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG014340.