Basic Information
Locus ID:
gene:TRIDC7AG012320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-6-linked may be involved in DNA repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 58300797 | 58303437 | - | gene:TRIDC7AG012320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 15,675.00 Da | 25.44 | 101.02 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 4 | 65 | 2.1E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 73 | 127 | 5.8E-17 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 65 | 1.57E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 68 | 127 | 2.53E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 70 | 133 | 9.4E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 69 | 8.0E-21 | - |
| SMART | SM00213 | ubq_7 | 1 | 65 | 1.3E-16 | IPR000626 |
| SMART | SM00213 | ubq_7 | 71 | 129 | 1.1E-6 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 65 | 13.293092 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 71 | 127 | 16.690052 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 102 | 122 | 4.1E-13 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 81 | 101 | 4.1E-13 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_037456891.1 | polyubiquitin-like [Triticum dicoccoides] | 0 |
| P0CG83 | Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6RD54 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG012320.