Basic Information
Locus ID:
gene:TRIDC7AG012310
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 57969364 | 57971035 | - | gene:TRIDC7AG012310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 26,631.87 Da | 57.61 | 80.89 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 62 | 2.21182E-12 | - |
| Pfam | PF00240 | Ubiquitin family | 72 | 143 | 5.3E-20 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 67 | 7.5E-13 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 67 | 144 | 1.52E-21 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 64 | 2.87E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 68 | 7.3E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 69 | 169 | 2.0E-28 | - |
| SMART | SM00213 | ubq_7 | 70 | 141 | 3.4E-17 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 65 | 1.0E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 69 | 11.246203 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 70 | 145 | 21.524191 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 80 | 100 | 1.8E-20 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 101 | 121 | 1.8E-20 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 122 | 143 | 1.8E-20 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_044443540.1 | polyubiquitin-like [Triticum aestivum] | 0 |
| P0CG83 | Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6T9I2 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG012310.