halophFGD

Basic Information

Locus ID: gene:TRIDC7AG010080

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
7A	46120950	46131273	+	gene:TRIDC7AG010080

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.85	102,331.50 Da	33.35	85.25	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	16	296	3.36788E-70	-
Pfam	PF00400	WD domain, G-beta repeat	90	126	1.8E-5	IPR001680
Pfam	PF04053	Coatomer WD associated region	318	762	1.4E-163	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	176	214	5.7E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	219	255	6.5E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	17	42	0.28	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	132	170	0.01	IPR001680
SUPERFAMILY	SSF101898	NHL repeat	218	491	1.54E-19	-
SUPERFAMILY	SSF50978	WD40 repeat-like	4	296	1.08E-78	IPR036322
Gene3D	G3DSA:2.130.10.10	-	9	299	4.4E-113	IPR015943
Gene3D	G3DSA:1.25.40.470	-	589	797	4.5E-83	-
SMART	SM00320	WD40_4	87	126	1.2E-8	IPR001680
SMART	SM00320	WD40_4	3	42	0.18	IPR001680
SMART	SM00320	WD40_4	130	170	2.0E-7	IPR001680
SMART	SM00320	WD40_4	45	84	0.3	IPR001680
SMART	SM00320	WD40_4	217	256	4.6E-12	IPR001680
SMART	SM00320	WD40_4	173	214	7.5E-8	IPR001680
PIRSF	PIRSF005567	Beta'-COP	1	884	0.0	IPR016453
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	10	51	9.03805	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	180	223	13.215325	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	94	126	12.680634	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	137	179	12.17936	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	137	171	10.047417	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	224	255	12.578312	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	180	217	9.915599	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	224	265	15.688272	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	94	126	10.548323	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	243	257	4.5E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	201	215	4.5E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	113	127	4.5E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	882	907	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	873	907	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat)

KEGG Pathway

KO Term:

K17302 (coatomer subunit beta')

Best hit

Source	Best Hit ID	Description
TAIR	AT1G52360.1	Coatomer, beta' subunit.
RefSeq	XP_037459172.1	coatomer subunit beta'-1 isoform X1 [Triticum dicoccoides]
Swiss-Prot	Q5VQ78	Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1
TrEMBL	A0A8R7UY89	Coatomer subunit beta' OS=Triticum urartu OX=4572 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC7AG010080.