Basic Information
Locus ID:
gene:TRIDC7AG002500
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 7601084 | 7605594 | - | gene:TRIDC7AG002500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 52,020.34 Da | 41.58 | 85.84 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02669 | Peptidase_C19M | 1 | 444 | 0.0 | IPR033809 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 117 | 443 | 1.6E-39 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 16 | 77 | 2.4E-13 | IPR001607 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 114 | 445 | 2.75E-60 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 89 | 8.24E-22 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 86 | 446 | 1.2E-90 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 1.2E-38 | IPR013083 |
| SMART | SM00290 | Zf_UBP_1 | 15 | 64 | 3.4E-17 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 14 | 75 | 17.813093 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 117 | 446 | 33.665836 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22285.2 | - | 0 |
| RefSeq | XP_037458951.1 | U4/U6.U5 tri-snRNP-associated protein 2-like [Triticum dicoccoides] | 0 |
| Q3TIX9 | Ubiquitin carboxyl-terminal hydrolase 39 OS=Mus musculus OX=10090 GN=Usp39 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6R7I0 | U4/U6.U5 tri-snRNP-associated protein 2 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG002500.