Basic Information
Locus ID:
gene:TRIDC7AG000270
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 1094187 | 1101437 | - | gene:TRIDC7AG000270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 62,436.80 Da | 39.19 | 95.17 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 230 | 271 | 7.32246E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 395 | 432 | 2.6E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 226 | 296 | 1.2E-24 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 435 | 473 | 1.4E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 353 | 391 | 8.2E-11 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 301 | 7.07E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 322 | 596 | 5.4E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 319 | 595 | 5.5E-55 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 299 | 4.3E-32 | IPR013083 |
| SMART | SM00185 | arm_5 | 393 | 433 | 0.0059 | IPR000225 |
| SMART | SM00185 | arm_5 | 516 | 556 | 55.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 352 | 392 | 1.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 434 | 474 | 0.015 | IPR000225 |
| SMART | SM00185 | arm_5 | 475 | 515 | 83.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 229 | 292 | 8.1E-37 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 225 | 299 | 47.246651 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 404 | 446 | 8.627399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 363 | 405 | 13.9124 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 602 | - | - |
| Coils | Coil | Coil | 76 | 96 | - | - |
| Coils | Coil | Coil | 49 | 50 | - | - |
| Coils | Coil | Coil | 71 | 71 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_048539891.1 | U-box domain-containing protein 12-like [Triticum urartu] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7RDC8 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG000270.