Basic Information
Locus ID:
gene:TRIDC6BG068160
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 684804863 | 684810313 | + | gene:TRIDC6BG068160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 89,126.05 Da | 40.83 | 100.88 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 25 | 71 | 1.00153E-18 | - |
| Pfam | PF04564 | U-box domain | 23 | 97 | 9.9E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 11 | 97 | 1.65E-22 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 101 | 440 | 1.94E-35 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 403 | 806 | 3.63E-20 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 396 | 560 | 1.1E-8 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 394 | 8.3E-33 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 95 | 3.7E-22 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 571 | 818 | 4.1E-20 | IPR011989 |
| SMART | SM00185 | arm_5 | 260 | 300 | 59.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 132 | 173 | 26.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 24 | 92 | 2.0E-25 | IPR003613 |
| SMART | SM00185 | arm_5 | 340 | 387 | 6.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 175 | 215 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 725 | 766 | 98.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 678 | 720 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 443 | 483 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 585 | 626 | 430.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 20 | 99 | 24.964331 | IPR003613 |
| Coils | Coil | Coil | 250 | 270 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_037455512.1 | U-box domain-containing protein 24-like [Triticum dicoccoides] | 0 |
| Q10FT0 | U-box domain-containing protein 24 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PUT1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG068160.