Basic Information
Locus ID:
gene:TRIDC6BG066330
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 673347278 | 673348555 | + | gene:TRIDC6BG066330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 46,337.43 Da | 43.54 | 102.61 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 17 | 59 | 1.16376E-25 | - |
| Pfam | PF04564 | U-box domain | 13 | 85 | 1.4E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 198 | 404 | 2.85E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 90 | 1.06E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 98 | 404 | 2.4E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 88 | 3.3E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 16 | 81 | 3.8E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 12 | 88 | 33.341209 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_037451511.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum dicoccoides] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PUL5 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG066330.