Basic Information
Locus ID:
gene:TRIDC6BG061580
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 644730903 | 644734637 | + | gene:TRIDC6BG061580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 56,994.44 Da | 46.23 | 83.61 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 257 | 311 | 7.3E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 54 | 115 | 9.4E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 122 | 242 | 2.8E-14 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 348 | 409 | 2.79E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 54 | 312 | 5.46E-51 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 178 | 315 | 3.3E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 47 | 177 | 3.1E-29 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 345 | 415 | 9.9E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 257 | 286 | 3.7E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 355 | 401 | 0.0014 | IPR001841 |
| SMART | SM00248 | ANK_2a | 84 | 113 | 5.1E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 146 | 0.011 | IPR002110 |
| SMART | SM00248 | ANK_2a | 214 | 243 | 4.5E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 151 | 181 | 190.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 214 | 246 | 13.57085 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 355 | 402 | 9.789479 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 214 | 242 | 13.124308 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 84 | 115 | 12.7794 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 84 | 116 | 13.89137 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 257 | 288 | 11.187517 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 149 | 10.20539 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 257 | 289 | 12.39561 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 148 | 9.118069 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 370 | 379 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 215 | 230 | 1.0E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 273 | 287 | 1.0E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_037452769.1 | probable E3 ubiquitin-protein ligase XBOS32 [Triticum dicoccoides] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6PRG7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG061580.