Basic Information
Locus ID:
gene:TRIDC6BG061280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 642371231 | 642374978 | - | gene:TRIDC6BG061280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 27,921.21 Da | 72.12 | 73.97 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 196 | 233 | 7.5E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 239 | 2.7E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 248 | 5.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 196 | 233 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 234 | 12.99088 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 211 | 220 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037452984.1 | E3 ubiquitin-protein ligase BRE1A-like isoform X1 [Triticum dicoccoides] | 0 |
| TrEMBL | F6M732 | Ubiquitin-protein ligase/zinc ion binding protein OS=Triticum aestivum OX=4565 GN=ZFP-1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG061280.