Basic Information
Locus ID:
gene:TRIDC6BG057160
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 612129326 | 612135510 | + | gene:TRIDC6BG057160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.87 | 71,312.02 Da | 56.51 | 75.13 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16504 | RING-HC_COP1 | 2 | 46 | 1.43215E-21 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 407 | 444 | 0.0052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 494 | 529 | 1.1E-4 | IPR001680 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 5 | 42 | 2.2E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 64 | 1.16E-16 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 325 | 623 | 5.5E-54 | IPR036322 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 92 | 5.5E-17 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 294 | 628 | 2.1E-150 | IPR015943 |
| SMART | SM00320 | WD40_4 | 532 | 571 | 0.79 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 402 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 0.99 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 529 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 625 | 440.0 | IPR001680 |
| SMART | SM00184 | ring_2 | 5 | 42 | 1.7E-5 | IPR001841 |
| SMART | SM00320 | WD40_4 | 308 | 352 | 0.52 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 5 | 42 | 11.530333 | IPR001841 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 498 | 531 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 412 | 444 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 498 | 538 | 13.014815 | IPR001680 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 20 | 29 | - | IPR017907 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 516 | 530 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 249 | - | - |
| Coils | Coil | Coil | 94 | 114 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32950.1 | Transducin/WD40 repeat-like superfamily protein. Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. | 0 |
| RefSeq | XP_037452314.1 | E3 ubiquitin-protein ligase COP1-like [Triticum dicoccoides] | 0 |
| P43254 | E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6PSP9 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG057160.