Basic Information
Locus ID:
gene:TRIDC6BG054830
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 589912227 | 589913854 | + | gene:TRIDC6BG054830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 49,055.39 Da | 43.23 | 101.10 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 51 | 92 | 7.35464E-22 | - |
| Pfam | PF04564 | U-box domain | 47 | 118 | 1.4E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 212 | 443 | 2.76E-22 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 120 | 1.59E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 217 | 445 | 1.2E-21 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 119 | 4.7E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 50 | 113 | 2.0E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 46 | 120 | 34.155014 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037451612.1 | U-box domain-containing protein 21-like [Triticum dicoccoides] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PS47 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG054830.