Basic Information
Locus ID:
gene:TRIDC6BG053370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 567854350 | 567856796 | - | gene:TRIDC6BG053370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 35,059.71 Da | 65.87 | 58.10 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16546 | RING-HC_RNF146 | 82 | 122 | 8.24315E-12 | IPR044110 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 83 | 121 | 9.3E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 75 | 145 | 2.5E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 152 | 3.2E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 83 | 121 | 2.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 122 | 12.326995 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 98 | 107 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 52 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27330.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037455110.1 | putative E3 ubiquitin-protein ligase RING1a [Triticum dicoccoides] | 0 |
| Q9CWS1 | E3 ubiquitin-protein ligase RNF135 OS=Mus musculus OX=10090 GN=Rnf135 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PNR3 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG053370.