Basic Information
Locus ID:
gene:TRIDC6BG052360
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 557581010 | 557584919 | - | gene:TRIDC6BG052360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 69,306.34 Da | 40.07 | 103.59 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 272 | 314 | 4.13453E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 392 | 430 | 2.9E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 475 | 513 | 9.5E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 269 | 338 | 1.7E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 342 | 3.34E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 361 | 638 | 7.3E-48 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 351 | 456 | 2.5E-22 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 457 | 641 | 1.0E-29 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 265 | 341 | 1.9E-29 | IPR013083 |
| SMART | SM00185 | arm_5 | 515 | 556 | 5.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 599 | 639 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 391 | 431 | 8.7E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 473 | 514 | 3.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 432 | 472 | 33.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 271 | 334 | 1.2E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 557 | 597 | 110.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 402 | 444 | 14.3324 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 267 | 341 | 42.169216 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 485 | 527 | 9.3624 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 264 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23030.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037452597.1 | U-box domain-containing protein 11-like [Triticum dicoccoides] | 0 |
| Q8GUG9 | U-box domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUB11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6PPC1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG052360.