Basic Information
Locus ID:
gene:TRIDC6BG051760
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 550315221 | 550320734 | - | gene:TRIDC6BG051760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 108,581.52 Da | 46.07 | 102.65 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 850 | 881 | 2.1E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 192 | 266 | 5.0E-15 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 270 | 5.79E-21 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 276 | 553 | 1.5E-29 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 622 | 914 | 2.72E-12 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 268 | 804 | 1.1E-38 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 822 | 982 | 5.8E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 267 | 2.2E-19 | IPR013083 |
| SMART | SM00185 | arm_5 | 300 | 340 | 160.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 750 | 792 | 8.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 842 | 883 | 8.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 507 | 552 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 341 | 381 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 426 | 466 | 31.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 193 | 261 | 7.4E-19 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 189 | 268 | 13.226088 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68940.1 | Armadillo/beta-catenin-like repeat family protein. | 0 |
| RefSeq | XP_037452483.1 | putative U-box domain-containing protein 42 [Triticum dicoccoides] | 0 |
| Q9CAA7 | Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=PUB42 PE=3 SV=1 | 0 | |
| TrEMBL | A0A453PGV9 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG051760.