Basic Information
Locus ID:
gene:TRIDC6BG050670
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 541855244 | 541865081 | + | gene:TRIDC6BG050670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 74,443.65 Da | 42.74 | 65.43 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15489 | PHD_SF | 249 | 295 | 1.3858E-10 | - |
| Pfam | PF00628 | PHD-finger | 249 | 296 | 3.7E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 244 | 307 | 1.35E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 306 | 3.7E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 248 | 296 | 7.9E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 246 | 298 | 9.1607 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 72 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20280.3 | - | 0 |
| RefSeq | XP_037451886.1 | PHD finger protein At3g20280-like [Triticum dicoccoides] | 0 |
| Q5PNS0 | PHD finger protein At3g20280 OS=Arabidopsis thaliana OX=3702 GN=At3g20280 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PR41 | PHD-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG050670.