Basic Information
Locus ID:
gene:TRIDC6BG050500
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 540244945 | 540249157 | - | gene:TRIDC6BG050500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 40,554.55 Da | 53.40 | 62.57 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16521 | RING-HC_MKRN | 207 | 265 | 1.56391E-16 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 207 | 264 | 1.9E-7 | IPR018957 |
| Pfam | PF18044 | CCCH-type zinc finger | 35 | 54 | 4.8E-7 | IPR041367 |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 299 | 321 | 0.0027 | - |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 7 | 26 | 0.0092 | - |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 143 | 163 | 2.7E-5 | IPR000571 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 32 | 54 | 2.09E-5 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 192 | 271 | 8.54E-15 | - |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 5 | 27 | 5.76E-7 | IPR036855 |
| Gene3D | G3DSA:6.10.250.3220 | - | 123 | 170 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 294 | 1.2E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1350 | - | 1 | 32 | 1.2E-6 | - |
| Gene3D | G3DSA:4.10.1000.10 | - | 33 | 84 | 7.7E-6 | - |
| SMART | SM00356 | c3hfinal6 | 3 | 28 | 3.3E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 294 | 322 | 0.058 | IPR000571 |
| SMART | SM00184 | ring_2 | 207 | 264 | 1.1E-6 | IPR001841 |
| SMART | SM00356 | c3hfinal6 | 139 | 164 | 0.01 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 31 | 56 | 1.6E-4 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 138 | 165 | 11.835526 | IPR000571 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 207 | 265 | 12.371254 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 30 | 57 | 14.032575 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 2 | 29 | 12.943439 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 294 | 323 | 12.276813 | IPR000571 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 231 | 240 | - | IPR017907 |
| Coils | Coil | Coil | 186 | 206 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08505.1 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037452300.1 | E3 ubiquitin-protein ligase makorin-like [Triticum dicoccoides] | 0 |
| Q5ZA07 | E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica OX=39947 GN=MKRN PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PR33 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG050500.