halophFGD

Basic Information

Locus ID: gene:TRIDC6BG048860

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: RING-type E3 ubiquitin transferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
6B	523459881	523464886	-	gene:TRIDC6BG048860

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.14	92,554.26 Da	50.99	90.24	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	329	371	3.01339E-23	-
Pfam	PF04564	U-box domain	326	395	8.0E-18	IPR003613
Pfam	PF05804	Kinesin-associated protein (KAP)	624	743	2.2E-5	-
SUPERFAMILY	SSF48371	ARM repeat	496	771	2.92E-21	IPR016024
SUPERFAMILY	SSF57850	RING/U-box	313	400	6.56E-27	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	325	400	2.0E-24	IPR013083
Gene3D	G3DSA:1.25.10.10	-	502	797	2.1E-23	IPR011989
SMART	SM00504	Ubox_2	328	391	1.2E-27	IPR003613
ProSiteProfiles	PS51698	U-box domain profile.	324	398	36.720268	IPR003613
MobiDBLite	mobidb-lite	consensus disorder prediction	271	292	-	-

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G36550.1	ARM repeat superfamily protein.
RefSeq	XP_037452316.1	U-box domain-containing protein 5-like [Triticum dicoccoides]
Swiss-Prot	O23225	U-box domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PUB5 PE=3 SV=3
TrEMBL	A0A3B6PQR9	RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC6BG048860.