Basic Information
Locus ID:
gene:TRIDC6BG048260
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 516557576 | 516560146 | + | gene:TRIDC6BG048260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 60,962.48 Da | 48.16 | 83.59 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 255 | 527 | 3.20632E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 492 | 527 | 8.7E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 271 | 330 | 3.7E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 388 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 404 | 442 | 0.0091 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 247 | 527 | 8.61E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 181 | 530 | 5.3E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 6.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 345 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 304 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 442 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 527 | 8.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 485 | 290.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 313 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 495 | 528 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 356 | 390 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 304 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 495 | 528 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 356 | 397 | 14.719144 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 514 | 528 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 375 | 389 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_037452531.1 | cell division cycle 20.2, cofactor of APC complex-like [Triticum dicoccoides] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PP37 | ANAPC4_WD40 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG048260.