Basic Information
Locus ID:
gene:TRIDC6BG048250
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 516304569 | 516310781 | - | gene:TRIDC6BG048250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 37,749.35 Da | 52.08 | 42.76 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16539 | RING-HC_RNF113A_B | 293 | 333 | 7.40639E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 294 | 335 | 8.5E-9 | - |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 218 | 243 | 5.2E-10 | IPR000571 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 215 | 248 | 1.83E-9 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 294 | 336 | 5.98E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 293 | 341 | 6.0E-14 | IPR013083 |
| Gene3D | G3DSA:4.10.1000.10 | - | 213 | 249 | 1.4E-6 | - |
| SMART | SM00356 | c3hfinal6 | 217 | 244 | 1.1E-7 | IPR000571 |
| SMART | SM00184 | ring_2 | 295 | 332 | 7.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 295 | 333 | 10.689412 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 217 | 245 | 14.877594 | IPR000571 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 310 | 319 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 171 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01350.1 | Zinc finger (CCCH-type/C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037453191.1 | zinc finger CCCH domain-containing protein 15-like isoform X1 [Triticum dicoccoides] | 0 |
| Q6K4V3 | Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0301000 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PQJ0 | Zinc finger CCCH domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG048250.