Basic Information
Locus ID:
gene:TRIDC6BG047770
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 511295958 | 511298291 | - | gene:TRIDC6BG047770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 38,690.24 Da | 28.78 | 103.40 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 40 | 115 | 2.4785E-50 | - |
| CDD | cd01803 | Ubl_ubiquitin | 192 | 267 | 2.4785E-50 | - |
| CDD | cd01803 | Ubl_ubiquitin | 268 | 343 | 2.4785E-50 | - |
| CDD | cd01803 | Ubl_ubiquitin | 116 | 191 | 2.4785E-50 | - |
| Pfam | PF00240 | Ubiquitin family | 194 | 265 | 2.9E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 42 | 113 | 2.9E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 270 | 341 | 2.9E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 118 | 189 | 2.9E-33 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 267 | 343 | 7.46E-34 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 33 | 115 | 1.04E-34 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 191 | 267 | 4.98E-34 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 115 | 191 | 4.98E-34 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 268 | 344 | 2.5E-46 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 36 | 115 | 2.7E-47 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 116 | 191 | 3.2E-47 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 192 | 267 | 3.1E-47 | - |
| SMART | SM00213 | ubq_7 | 40 | 111 | 3.0E-35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 268 | 339 | 3.0E-35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 192 | 263 | 3.0E-35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 116 | 187 | 3.0E-35 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 40 | 115 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 192 | 267 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 268 | 343 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 116 | 191 | 30.452106 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 66 | 91 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 218 | 243 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 142 | 167 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 294 | 319 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 50 | 70 | 3.2E-38 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 71 | 91 | 3.2E-38 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 92 | 113 | 3.2E-38 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_049387472.1 | polyubiquitin isoform X5 [Solanum stenotomum] | 0 |
| P69309 | Polyubiquitin OS=Avena fatua OX=4499 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8S0PD39 | Polyubiquitin 10 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A111844 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG047770.