Basic Information
Locus ID:
gene:TRIDC6BG047400
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 507695389 | 507696681 | + | gene:TRIDC6BG047400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 46,473.22 Da | 47.61 | 105.91 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 54 | 1.23976E-21 | - |
| Pfam | PF04564 | U-box domain | 8 | 76 | 1.2E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 178 | 404 | 1.31E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 77 | 1.46E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 89 | 5.4E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 105 | 409 | 9.0E-23 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 10 | 74 | 7.4E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 81 | 31.766674 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 100 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_037454965.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum dicoccoides] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PQE1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG047400.