Basic Information
Locus ID:
gene:TRIDC6BG046540
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 498165497 | 498173615 | + | gene:TRIDC6BG046540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 43,909.42 Da | 28.34 | 76.17 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 277 | 311 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 115 | 151 | 4.5E-6 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 85 | 105 | 4.0E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 272 | 0.0036 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 82 | 106 | 6.15E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 112 | 400 | 1.28E-47 | IPR036322 |
| Gene3D | G3DSA:2.30.30.1190 | - | 80 | 112 | 4.2E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 113 | 180 | 4.2E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 183 | 405 | 9.0E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 362 | 399 | 34.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 83 | 107 | 0.0023 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 2 | 27 | 0.054 | IPR000571 |
| SMART | SM00320 | WD40_4 | 154 | 189 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 228 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 359 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 312 | 3.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 272 | 0.0078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 151 | 9.5E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 119 | 160 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 281 | 11.343905 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 119 | 151 | 11.418318 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 2 | 28 | 10.840281 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 81 | 108 | 14.342415 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 275 | 8.65015 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 259 | 273 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 259 | 273 | 1.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 138 | 152 | 1.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 299 | 313 | 1.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 61 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_037451908.1 | zinc finger CCCH domain-containing protein 17 [Triticum dicoccoides] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6PN58 | Zinc finger CCCH domain-containing protein 48-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG046540.