Basic Information
Locus ID:
gene:TRIDC6BG045570
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
HUB1
Description:
E3 ubiquitin-protein ligase BRE1-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 483925027 | 483938903 | - | gene:TRIDC6BG045570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 99,333.78 Da | 49.15 | 85.19 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16499 | RING-HC_BRE1_like | 822 | 863 | 5.37844E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 823 | 862 | 1.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 823 | 867 | 3.12E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 805 | 876 | 1.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 824 | 862 | 4.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 824 | 862 | 11.66311 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 839 | 848 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| Coils | Coil | Coil | 634 | 654 | - | - |
| Coils | Coil | Coil | 781 | 801 | - | - |
| Coils | Coil | Coil | 50 | 77 | - | - |
| Coils | Coil | Coil | 690 | 724 | - | - |
| Coils | Coil | Coil | 236 | 270 | - | - |
| Coils | Coil | Coil | 362 | 382 | - | - |
| Coils | Coil | Coil | 592 | 619 | - | - |
| Coils | Coil | Coil | 739 | 766 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44950.1 | histone mono-ubiquitination 1. The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. | 0 |
| RefSeq | XP_037450802.1 | E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Triticum dicoccoides] | 0 |
| A2XW69 | E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=BRE1A PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6PNC5 | E3 ubiquitin protein ligase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG045570.