Basic Information
Locus ID:
gene:TRIDC6BG041660
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, ZZ type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 442023148 | 442028582 | - | gene:TRIDC6BG041660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 46,334.03 Da | 53.02 | 71.32 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02338 | ZZ_PCMF_like | 310 | 365 | 5.50695E-13 | - |
| Pfam | PF00569 | Zinc finger, ZZ type | 308 | 347 | 2.9E-6 | IPR000433 |
| Pfam | PF15227 | zinc finger of C3HC4-type, RING | 202 | 239 | 1.6E-7 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 62 | 107 | 4.8E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 261 | 3.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 364 | 7.06E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 60 | 111 | 3.98E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 286 | 1.2E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 175 | 1.0E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.60.90 | - | 302 | 365 | 1.8E-19 | IPR043145 |
| SMART | SM00184 | ring_2 | 63 | 102 | 0.0012 | IPR001841 |
| SMART | SM00184 | ring_2 | 202 | 239 | 2.0E-6 | IPR001841 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 306 | 365 | 10.272409 | IPR000433 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 103 | 10.541882 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 202 | 239 | 10.807436 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 217 | 226 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 186 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24800.1 | proteolysis 1. Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis). | 0 |
| RefSeq | XP_037452299.1 | E3 ubiquitin-protein ligase PRT1-like [Triticum dicoccoides] | 0 |
| Q8LBL5 | E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana OX=3702 GN=PRT1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6PP66 | E3 ubiquitin-protein ligase PRT1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG041660.