Basic Information
Locus ID:
gene:TRIDC6BG041510
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 439856904 | 439863070 | - | gene:TRIDC6BG041510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 71,286.15 Da | 55.25 | 80.61 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 206 | 377 | 1.40382E-53 | - |
| CDD | cd16448 | RING-H2 | 23 | 67 | 6.97372E-11 | - |
| Pfam | PF00092 | von Willebrand factor type A domain | 207 | 388 | 1.7E-25 | IPR002035 |
| Pfam | PF17123 | RING-like zinc finger | 23 | 52 | 1.4E-9 | IPR001841 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 552 | 624 | 3.0E-22 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 203 | 390 | 2.23E-34 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 76 | 9.89E-15 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 207 | 391 | 1.2E-44 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 78 | 2.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 23 | 66 | 2.4E-6 | IPR001841 |
| SMART | SM00327 | VWA_4 | 205 | 389 | 1.6E-24 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 23 | 67 | 12.090947 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 207 | 390 | 17.82538 | IPR002035 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037453311.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PP50 | Zinc finger (C3HC4-type RING finger) family protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG041510.