Basic Information
Locus ID:
gene:TRIDC6BG039780
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 422798269 | 422803852 | + | gene:TRIDC6BG039780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 21,955.49 Da | 37.14 | 74.31 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 105 | 133 | 9.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 160 | 188 | 0.079 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 59 | 189 | 1.47E-21 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 191 | 1.4E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 158 | 195 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 85 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 138 | 0.0032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 53 | 94 | 9.773251 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44530.2 | homolog of histone chaperone HIRA. Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2. | 0 |
| RefSeq | XP_044373041.1 | protein HIRA-like [Triticum aestivum] | 0 |
| Q652L2 | Protein HIRA OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0567700 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453GYR5 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG039780.