Basic Information
Locus ID:
gene:TRIDC6BG038490
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ig-like domain from next to BRCA1 gene
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 401658926 | 401664483 | - | gene:TRIDC6BG038490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 94,775.51 Da | 50.59 | 80.73 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14947 | NBR1_like | 510 | 623 | 6.21817E-49 | IPR032350 |
| CDD | cd06398 | PB1_Joka2 | 21 | 107 | 8.01244E-41 | - |
| CDD | cd14319 | UBA_NBR1 | 821 | 859 | 3.3801E-14 | - |
| Pfam | PF00569 | Zinc finger, ZZ type | 437 | 469 | 6.3E-10 | IPR000433 |
| Pfam | PF16158 | Ig-like domain from next to BRCA1 gene | 521 | 622 | 2.8E-31 | IPR032350 |
| Pfam | PF00564 | PB1 domain | 21 | 103 | 2.6E-10 | IPR000270 |
| SUPERFAMILY | SSF57850 | RING/U-box | 429 | 486 | 2.71E-14 | - |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 21 | 108 | 4.49E-14 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 822 | 859 | 3.76E-7 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 821 | 862 | 1.3E-17 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 506 | 627 | 2.4E-31 | IPR013783 |
| Gene3D | G3DSA:3.10.20.90 | - | 20 | 105 | 6.3E-16 | - |
| Gene3D | G3DSA:3.30.60.90 | - | 427 | 487 | 1.5E-12 | IPR043145 |
| Gene3D | G3DSA:1.10.8.10 | - | 776 | 820 | 6.2E-17 | - |
| SMART | SM00291 | zz_5 | 434 | 476 | 5.7E-9 | IPR000433 |
| SMART | SM00666 | PB1_new | 20 | 105 | 2.2E-9 | IPR000270 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 20 | 105 | 14.841398 | IPR000270 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 818 | 861 | 8.691358 | IPR015940 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 434 | 481 | 12.027581 | IPR000433 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 777 | 816 | 9.076911 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 344 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24690.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein. | 0 |
| RefSeq | XP_037452312.1 | protein JOKA2-like [Triticum dicoccoides] | 0 |
| M1BJF6 | Protein JOKA2 OS=Solanum tuberosum OX=4113 GN=JOKA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PNI2 | Protein NBR1 homolog OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG038490.