HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene:TRIDC6BG033560
Species & Taxonomic ID: Triticum dicoccoides & 85692
Genome Assembly: GCF_002162155.2
Description: phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
Chromosome Start End Strand ID
6B 289189973 289199857 - gene:TRIDC6BG033560
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.58 64,881.67 Da 51.51 72.95 -0.57
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00400 WD domain, G-beta repeat 294 330 0.17 IPR001680
SUPERFAMILY SSF50978 WD40 repeat-like 109 574 1.83E-33 IPR036322
Gene3D G3DSA:2.130.10.10 - 143 580 6.6E-27 IPR015943
SMART SM00320 WD40_4 291 330 0.94 IPR001680
SMART SM00320 WD40_4 442 496 94.0 IPR001680
SMART SM00320 WD40_4 174 214 58.0 IPR001680
SMART SM00320 WD40_4 400 438 310.0 IPR001680
SMART SM00320 WD40_4 341 381 17.0 IPR001680
SMART SM00320 WD40_4 101 136 7.2 IPR001680
PIRSF PIRSF037309 PPA2_B55 80 582 8.6E-190 IPR000009
ProSitePatterns PS01024 Protein phosphatase 2A regulatory subunit PR55 signature 1. 174 188 - IPR018067
ProSitePatterns PS01025 Protein phosphatase 2A regulatory subunit PR55 signature 2. 300 314 - IPR018067
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 358 386 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 415 442 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 469 495 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 302 329 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 443 468 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 190 218 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 551 580 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 330 357 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 387 414 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 161 189 4.9E-154 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 115 135 4.9E-154 IPR000009
MobiDBLite mobidb-lite consensus disorder prediction 39 60 - -
MobiDBLite mobidb-lite consensus disorder prediction 233 257 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding) GO:0019888 (protein phosphatase regulator activity)
Cellular Component:
GO:0000159 (protein phosphatase type 2A complex)
KEGG Pathway
KO Term:
K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)
Pathway:
ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G17720.1 Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B 0
RefSeq XP_044419564.1 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 [Triticum aestivum] 0
Swiss-Prot A2X2K3 Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 0
TrEMBL A0A453NUM0 Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC6BG033560.

Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.